PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G089801.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 117aa MW: 12941.5 Da PI: 7.9743

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G089801.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.2	3.8e-07	18	98	33	97
NAM 33 vikevdiykvePwdLpk.........kvkaeek.ewyfFskrdkkyatgk...rknra..tk.sgyWkatgkdkevlskkg 97 ++++d+++ P dL + +++ + + wyf+s ++ k+++gk +++ra t+ + +W+ + k+v+ ++g Sobic.003G089801.1.p 18 YVHHADVCSPAPADLVAnlilasgtdQMEDGYNsVWYFYSLKRYKNTKGKasgHRQRAigTRgETRWHPEVRAKDVHGSEG 98 38899********745788887764444433599***99997664443333323334778******9987544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-6	16	98	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSGDLCWCAP PTAAEIPYVH HADVCSPAPA DLVANLILAS GTDQMEDGYN SVWYFYSLKR 60 YKNTKGKASG HRQRAIGTRG ETRWHPEVRA KDVHGSEGGT FCTFSYGRMK DGLERMG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G089801.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	7e-29	uncharacterized protein LOC8079646
TrEMBL	A0A1W0VWA8	8e-84	A0A1W0VWA8_SORBI; Uncharacterized protein (Fragment)
STRING	Sb01g002900.1	5e-31	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Sobic.003G089801.1.p