PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G102200.1.p
Common NameSb03g008560, SORBIDRAFT_03g008560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 233aa    MW: 23988.2 Da    PI: 8.9583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G102200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.1e-0837101655
                           HHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkas..............kapskK.lsKaeiLekAveYIksLq 55 
                           + +E++RR +++s   +L +llP+a               ++++k  ++  + L  A  YIk+L+
  Sobic.003G102200.1.p  37 KDVEKNRRLHMKSLCLKLSSLLPPAAthaslladaaaaasNPNNKDsVTQLDQLDSAAAYIKQLR 101
                           689*********************555************7333333699**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577132No hitNo description
PROSITE profilePS508888.93731100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1035110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-936111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-537100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKSRRQSSGG SSAACAAGEA NTHTHSSGGG GCKLERKDVE KNRRLHMKSL CLKLSSLLPP  60
AATHASLLAD AAAAASNPNN KDSVTQLDQL DSAAAYIKQL RERIEALKQR KAGGPGPAAG  120
CNGGGAVTAS ASASSASGGG AGVRMPVIEV RYQDGTLDVV LISDAGRPFK LHEVITVLEQ  180
EGAEVVSASF SVIGDRIFYT VHSQALSPWV GLDAARVSQR LHDLLLLAPI LV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.86740.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G102200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388180.0BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268680.0KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457513.11e-168transcription factor bHLH168
TrEMBLC5XEZ01e-166C5XEZ0_SORBI; Uncharacterized protein
STRINGSb03g008560.11e-167(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.15e-15bHLH family protein