PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G102300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 217aa    MW: 23088.2 Da    PI: 10.4614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G102300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-102372554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                           +e+ErrRR++++s   +L +l+Pk     +s K  ++    L +A  YIk+L
  Sobic.003G102300.1.p 23 RKEVERRRRQQMKSLCVKLASLIPKeH---YSSKdaMTQLGSLDEAATYIKKL 72
                          479**********************55...444446***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-101283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.7721872IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-72177No hitNo description
Gene3DG3DSA:4.10.280.109.2E-132285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-72472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-82478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKSRSSSMSN NSGSTTTTTA VQRKEVERRR RQQMKSLCVK LASLIPKEHY SSKDAMTQLG  60
SLDEAATYIK KLKERVEELR QKRTSARLLA AAAGMRRGGG GAGGASTSPA ATTTASGGAG  120
SSEEAGDHMP VAPPAVVEVR QHSDGSSLDV VLISSVERPF KLHEVVTVLQ EEGAETINAN  180
FSVAGTKIFY TIHCRAFSPR IGIEVSRISE RLRALG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G102300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277510.0KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457514.21e-156transcription factor bHLH162
TrEMBLA0A1B6Q2F71e-155A0A1B6Q2F7_SORBI; Uncharacterized protein
STRINGSb03g008570.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-14bHLH family protein