PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G105200.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 457aa MW: 48248.2 Da PI: 7.6086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G105200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.6e-05	345	383	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Sobic.003G105200.1.p 345 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 383 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.712	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-11	343	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-5	343	387	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-9	347	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MMAASSSSSN LSDHLVQDDL PWPASSSSSS LQPFAPAPHH HSAIFGGNQL WCQQPLTLNC 60 ADRHHCEELE VLLSAQGGHH HSHSISHHSP VISPQLSSLL MMQDLGFQWS NCGNSFVDTS 120 SSSMPPMNGQ QHDNCHNKIK DNSSRSSCAS TAIAACHDDM VLDGGGGGGG LPAMAVAADL 180 DGATAVLPSV NISRTPTPTP PHQRLFQLAA PPPLPGDAFE ILASSRLCKT LLLSQASSVL 240 LHNGMVPLLR SEHVPYGPPA GAAHPHGPSI DNYKQMGASS SCVDAAGGGR HWSAEHDAAC 300 QSRAAAAAAA ARPVPSSQLA PSSKKPRVEQ RSSSSTTIVP SFKVRKEKLG DRIAALQQLV 360 SPFGKTDTAS VLMEAIGYIK FLQDQVETLS RPYLKSSRSK KPKPTQRGCS NANAAGEQEE 420 TRLDLRSRGL CLVPLSCTSY VTNENGVWVP PNFRGN*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MMAASSSSSN LSDHLVQDDL PWPASSSSSS LQPFAPAPHH HSAIFGGNQL WCQQPLTLNC  60
ADRHHCEELE VLLSAQGGHH HSHSISHHSP VISPQLSSLL MMQDLGFQWS NCGNSFVDTS  120
SSSMPPMNGQ QHDNCHNKIK DNSSRSSCAS TAIAACHDDM VLDGGGGGGG LPAMAVAADL  180
DGATAVLPSV NISRTPTPTP PHQRLFQLAA PPPLPGDAFE ILASSRLCKT LLLSQASSVL  240
LHNGMVPLLR SEHVPYGPPA GAAHPHGPSI DNYKQMGASS SCVDAAGGGR HWSAEHDAAC  300
QSRAAAAAAA ARPVPSSQLA PSSKKPRVEQ RSSSSTTIVP SFKVRKEKLG DRIAALQQLV  360
SPFGKTDTAS VLMEAIGYIK FLQDQVETLS RPYLKSSRSK KPKPTQRGCS NANAAGEQEE  420
TRLDLRSRGL CLVPLSCTSY VTNENGVWVP PNFRGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G105200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457528.2	0.0	transcription factor bHLH110
TrEMBL	A0A1B6Q2I4	0.0	A0A1B6Q2I4_SORBI; Uncharacterized protein
STRING	Sb03g008835.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42
Representative plant	OGRP10219	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G105200.1.p