PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G105800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 381aa    MW: 40940.9 Da    PI: 8.0711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G105800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.6e-51341721128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+ +yL+k++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+d
  Sobic.003G105800.1.p  34 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTD 121
                           79***************************9.89***************87778999********************************* PP

                   NAM  90 kevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++ +            + + +g+kk Lvfykgr pkg kt+W+mheyrl
  Sobic.003G105800.1.p 122 KPITLSaagagsssdsssRAAMIGVKKALVFYKGRPPKGMKTSWIMHEYRL 172
                           ****997777666555444444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6129205IPR003441NAC domain
PROSITE profilePS5100559.09934205IPR003441NAC domain
PfamPF023651.3E-2635172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTIDLGLAAS AASSSSGGRR VGGVPPPSTP CTALPPGFRF HPTDEELILH YLRKRAAAAP  60
CPAPVIAEVD IYKFDPWDLP AKAVFGEAEW YFFSPRDRKY PNGVRPNRAA GSGYWKATGT  120
DKPITLSAAG AGSSSDSSSR AAMIGVKKAL VFYKGRPPKG MKTSWIMHEY RLAEALNAAN  180
TYRPIRFKNS SMRLDDWVLC RIYKKTTPQL AYMSPPHEEA SPSMDGGGGG GFDLGLQPDD  240
SVSADDIMAA TSSSYASRLP RPASISDYLV DYSAVSELFE ALPPPPPETT TTTAAQTGTD  300
AATRFYFGNG EPSTSVAQQQ SPLKRRSMEE DYTNSGMNML HASSSSKRVM MSDHHHASSM  360
AASNAFSVFE PGQTSLQDRI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-703320716167NO APICAL MERISTEM PROTEIN
1ut4_B2e-703320716167NO APICAL MERISTEM PROTEIN
1ut7_A2e-703320716167NO APICAL MERISTEM PROTEIN
1ut7_B2e-703320716167NO APICAL MERISTEM PROTEIN
3swm_A2e-703320719170NAC domain-containing protein 19
3swm_B2e-703320719170NAC domain-containing protein 19
3swm_C2e-703320719170NAC domain-containing protein 19
3swm_D2e-703320719170NAC domain-containing protein 19
3swp_A2e-703320719170NAC domain-containing protein 19
3swp_B2e-703320719170NAC domain-containing protein 19
3swp_C2e-703320719170NAC domain-containing protein 19
3swp_D2e-703320719170NAC domain-containing protein 19
4dul_A2e-703320716167NAC domain-containing protein 19
4dul_B2e-703320716167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G105800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554200.0EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457533.20.0NAC transcription factor NAM-B2
TrEMBLA0A1B6Q2I20.0A0A1B6Q2I2_SORBI; NAC44
STRINGPavir.Ea00837.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-74NAC domain containing protein 47