PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G105800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 309aa    MW: 34154 Da    PI: 12.2401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G105800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.96e-51341721128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+ +yL+k++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+d
  Sobic.003G105800.2.p  34 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTD 121
                           79***************************9.89***************87778999********************************* PP

                   NAM  90 kevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++ +            + + +g+kk Lvfykgr pkg kt+W+mheyrl
  Sobic.003G105800.2.p 122 KPITLSaagagsssdsssRAAMIGVKKALVFYKGRPPKGMKTSWIMHEYRL 172
                           ****997777666555444444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5729177IPR003441NAC domain
PROSITE profilePS5100554.93934211IPR003441NAC domain
PfamPF023658.3E-2735172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTIDLGLAAS AASSSSGGRR VGGVPPPSTP CTALPPGFRF HPTDEELILH YLRKRAAAAP  60
CPAPVIAEVD IYKFDPWDLP AKAVFGEAEW YFFSPRDRKY PNGVRPNRAA GSGYWKATGT  120
DKPITLSAAG AGSSSDSSSR AAMIGVKKAL VFYKGRPPKG MKTSWIMHEY RLAEALNAAN  180
TYRPISWTTG CCAGSTRRPH RSWRTCRRRT RRRRRPWTAA AAAASTSACS RTTPSPPTTS  240
WRPRRRRMQA GCRARRPSRT TSSTTRPCPS CSRPCRRRRR RRRRRRRRRQ GQTQPRGSTS  300
VTASLAPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-623417215140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196215RRPHRSWRTCRRRTRRRRRP
2275288RRRRRRRRRRRRRR
3276289RRRRRRRRRRRRRQ
4278288RRRRRRRRRRR
5280288RRRRRRRRR
6281288RRRRRRRR
7282288RRRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88812e-82callus| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation and senescence. Not induced during flower development. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Expressed in flag leaves, green spikes and peduncles. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Highest expression in flag leaves. Expressed in green spikes, peduncles and stamens. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G105800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-169EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457533.21e-132NAC transcription factor NAM-B2
SwissprotA0SPJ32e-73NAMA1_TRITD; NAC transcription factor NAM-A1
SwissprotA0SPJ62e-73NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLA0A1W0VWR40.0A0A1W0VWR4_SORBI; Uncharacterized protein
STRINGPavir.J23256.1.p6e-98(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-64NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]