PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G105800.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 301aa    MW: 32406 Da    PI: 11.4172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G105800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.6e-51341721128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+ +yL+k++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+d
  Sobic.003G105800.3.p  34 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAVFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTD 121
                           79***************************9.89***************87778999********************************* PP

                   NAM  90 kevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++ +            + + +g+kk Lvfykgr pkg kt+W+mheyrl
  Sobic.003G105800.3.p 122 KPITLSaagagsssdsssRAAMIGVKKALVFYKGRPPKGMKTSWIMHEYRL 172
                           ****997777666555444444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5729177IPR003441NAC domain
PROSITE profilePS5100553.58934190IPR003441NAC domain
PfamPF023657.8E-2735172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTIDLGLAAS AASSSSGGRR VGGVPPPSTP CTALPPGFRF HPTDEELILH YLRKRAAAAP  60
CPAPVIAEVD IYKFDPWDLP AKAVFGEAEW YFFSPRDRKY PNGVRPNRAA GSGYWKATGT  120
DKPITLSAAG AGSSSDSSSR AAMIGVKKAL VFYKGRPPKG MKTSWIMHEY RLAEALNAAN  180
TYRPIRFKNS SMRDLQEDHT AAGVHVAAAR GGVAVHGRRR RRRLRPRPAA GRLRLRRRHH  240
GGHVVVVCKP AAAPGVHLGL PRRLLGRVRA VRGPAAAAAG DDDDDGGADR DRRSHEVLLR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-623417215140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223GRRRRRRL
2217224RRRRRRLR
3220227RRRLRPRP
4220237RRRLRPRPAAGRLRLRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88812e-82callus| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Expressed in flag leaves, green spikes and peduncles. {ECO:0000269|PubMed:17124321}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G105800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-170EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457533.21e-137NAC transcription factor NAM-B2
SwissprotA0SPJ35e-72NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBLA0A1W0VWP90.0A0A1W0VWP9_SORBI; Uncharacterized protein
STRINGPavir.J23256.1.p1e-103(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-64NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]