PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G110932.1.p
Common NameSb03g009330, SORBIDRAFT_03g009330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 356aa    MW: 38507.2 Da    PI: 4.7225
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G110932.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM713.2e-2291581128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd.....iykvePwdLp.kkvkaeekewyfFskrdkkya........tgkrkn 75 
                           lppG+rF+Pt +elv +yL +++ g++  +  +i + d         +Pw+L  ++ +++++e yfF + + ++          g r+ 
  Sobic.003G110932.1.p   9 LPPGVRFDPTGDELVEYYLLPRALGRPPAVPGIIIDDDtatatTSAQHPWKLLtRHRRTDDSEAYFFERVAGSTDgakakgggAGARQD 97 
                           79*************************66555533332122226677*****7445566888*****9877665545555555667*** PP

                   NAM  76 ratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           r+   g+W   g++++  ++        ++++ + k +L + +gr++kg +t Wvmhey++
  Sobic.003G110932.1.p  98 RSCGGGRWTWVGQKRAPDEAlplrgdsdGERVSWGKYSLNLQEGRRRKGGSTGWVMHEYTV 158
                           *************9988877888888876777899************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-293176IPR003441NAC domain
PROSITE profilePS5100528.6899177IPR003441NAC domain
PfamPF023651.2E-1410157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSAAEALGLP PGVRFDPTGD ELVEYYLLPR ALGRPPAVPG IIIDDDTATA TTSAQHPWKL  60
LTRHRRTDDS EAYFFERVAG STDGAKAKGG GAGARQDRSC GGGRWTWVGQ KRAPDEALPL  120
RGDSDGERVS WGKYSLNLQE GRRRKGGSTG WVMHEYTVAA SPQCPLLPVK LCHVSFTGHG  180
QKRQRVPDDD GEGQDQSQAY HQEQFMGFMN PAGSSTETHC AMQPASDLGS SQQPQASHPL  240
NEEHQFSVAQ LLGGISSPLC PPTTPAAYHE QQNIQSFPLA DLPLSTDQES CTTEQSHGNM  300
NQYDDFFRGW GDFNSFCDTS GIQDDDDMAA QTLAAVGCGG GSSWDPHFFY EQPAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G110932.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.16e-48NAC domain-containing protein 48
TrEMBLA0A1W0VWU00.0A0A1W0VWU0_SORBI; Uncharacterized protein
STRINGSb03g009330.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.25e-12NAC domain containing protein 50