PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G113900.1.p
Common NameSb03g009590, SORBIDRAFT_03g009590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 165aa    MW: 18013.2 Da    PI: 8.2247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G113900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-096587527
                          --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                          +C++f rtGtCkyGd+C++ H++
  Sobic.003G113900.1.p 65 ICHHFVRTGTCKYGDSCRYFHPK 87
                          7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.0E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.69E-16450No hitNo description
PfamPF062209.6E-11537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.0846088IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-46287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-76489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-66586IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-76587IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARRRHLQGVQ HQRARALWYD SIRHQEQHGG VSSLLLPDGT  60
LAKGICHHFV RTGTCKYGDS CRYFHPKPDG VNPALAAPGS GPGPMVQQSD FIGNQPNFVG  120
YQGPDRNSFS GNILGGHTAW GNLPPSLQPP PEGGYPPLPF IDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G113900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279920.0KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455379.11e-119zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP111e-77C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLC5XFS51e-118C5XFS5_SORBI; Uncharacterized protein
STRINGSb03g009590.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-28C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]