PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G119800.2.p
Common NameSb03g010130, SORBIDRAFT_03g010130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 416aa    MW: 46072.2 Da    PI: 4.4927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G119800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.46.9e-5091361128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGf FhP+d el+++yLk+k+ g+k+e  + i+evdiyk+ePwdLp+  ++  ++++w+fF++rd+ky+tg+r+nrat +gyWk+tg
  Sobic.003G119800.2.p   9 LPPGFGFHPSDPELISHYLKRKILGQKIEY-DLIPEVDIYKHEPWDLPAkcNLPIKDNKWHFFASRDRKYPTGSRSNRATLAGYWKSTG 96 
                           79***************************9.99***************6244555999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++++  ++++ g+kktLvf++gr p+g++t+W+mhey +
  Sobic.003G119800.2.p  97 KDRAIKL-NKRTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136
                           *******.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-574159IPR003441NAC domain
PROSITE profilePS5100555.7149159IPR003441NAC domain
PfamPF023655.3E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEVLRDMHLP PGFGFHPSDP ELISHYLKRK ILGQKIEYDL IPEVDIYKHE PWDLPAKCNL  60
PIKDNKWHFF ASRDRKYPTG SRSNRATLAG YWKSTGKDRA IKLNKRTLGT KKTLVFHEGR  120
PPSGRRTEWI MHEYYIDENE CKVSPDMKDA FVLCRVTKRS DWALDNDNEV GNRNSHLEQL  180
DDAATSVVST VKPEDAAASV ICPEESNHAA TPVGSAELCN DVAQAAITPD SRSPNGGIEL  240
ETWLEELLDP SPSFNLVADT GSAGVSLTEQ CAESSNLQNP GFMAPNIGPG HASPIQDGTD  300
ATDYLFTDDL PEDLYSMLYP GTDQFNDNIF LEQVGQEGIA FPTNQAYYMM GTDAYALPNN  360
FENGTPNVEL QLDQENDQMN LPNGNVDTGI AIRSRRATAS PANISLAYGN IKMQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45616212172Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.83680.0callus| embryo| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G119800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554470.0EU955447.1 Zea mays clone 1532551 TIP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312344.10.0NAC domain-containing protein 74
SwissprotQ7GCL71e-133NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A1B6Q2Q70.0A0A1B6Q2Q7_SORBI; Uncharacterized protein
STRINGSb03g010130.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]