PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G131100.2.p

Common Name

Dof14, Sb03g011160, SORBIDRAFT_03g011160

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 471aa MW: 50629.9 Da PI: 9.0102

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G131100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.3e-38	98	157	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvP+G+grr+nk Sobic.003G131100.2.p 98 PDKILPCPRCHSMETKFCYFNNYNVNQPRHFCRNCKRYWTAGGTMRNVPIGSGRRRNKDP 157 7899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	95	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-31	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.397	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MVSTKLANDV RSNDGMSCLP NMPLIVKASP FPSKNNMKNG LQAISSQHGK MEADSKSEEV 60 KNSLQAIISQ PGKTDDSKSE ETKTESGGSG QEKVLKKPDK ILPCPRCHSM ETKFCYFNNY 120 NVNQPRHFCR NCKRYWTAGG TMRNVPIGSG RRRNKDPSHH HHVTKPCDHI VTANGDVSDA 180 TQRQSLAVKP SVLQGSGKQN ETACKSVSPV LNIKEQNNAD LISLVSGDNK EEKSCASSVV 240 SGSSENWMPE NTVKKEEDST SAYGNGVKEP DPNTQSHHAG PISVFSGNPA AVMVTNQSSA 300 DGIHGPGNGT VSPLSLPPPP MVPTPGICAP AVPFPLVPAF VSCIPGWPSA VWGAAWPGSS 360 GPTLLSLPPN SLAFSGSNSR VLGKHTRVAN LQEEQKAEKK FWVPKALRID NPEEAAKSSI 420 WASLGIKPDE RIIFKSFQSK DLKNSETKTP ESLQANPAAF SRSQTFQERT *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MVSTKLANDV RSNDGMSCLP NMPLIVKASP FPSKNNMKNG LQAISSQHGK MEADSKSEEV  60
KNSLQAIISQ PGKTDDSKSE ETKTESGGSG QEKVLKKPDK ILPCPRCHSM ETKFCYFNNY  120
NVNQPRHFCR NCKRYWTAGG TMRNVPIGSG RRRNKDPSHH HHVTKPCDHI VTANGDVSDA  180
TQRQSLAVKP SVLQGSGKQN ETACKSVSPV LNIKEQNNAD LISLVSGDNK EEKSCASSVV  240
SGSSENWMPE NTVKKEEDST SAYGNGVKEP DPNTQSHHAG PISVFSGNPA AVMVTNQSSA  300
DGIHGPGNGT VSPLSLPPPP MVPTPGICAP AVPFPLVPAF VSCIPGWPSA VWGAAWPGSS  360
GPTLLSLPPN SLAFSGSNSR VLGKHTRVAN LQEEQKAEKK FWVPKALRID NPEEAAKSSI  420
WASLGIKPDE RIIFKSFQSK DLKNSETKTP ESLQANPAAF SRSQTFQERT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G131100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT084638	0.0	BT084638.2 Zea mays full-length cDNA clone ZM_BFb0150D22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455459.1	0.0	cyclic dof factor 2
TrEMBL	A0A1B6Q2W5	0.0	A0A1B6Q2W5_SORBI; Uncharacterized protein
STRING	Sb03g011160.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-43	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Sobic.003G131100.2.p
Entrez Gene	8054666

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]