PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G146200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 312aa    MW: 33340.3 Da    PI: 6.9435
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G146200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like52.11.4e-1678135156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRla 56 
                           +prl+Wt eLH+ Fv+a ++LG  ++A+P++ile     m+v+ +++e+v+SHLQk++l+
  Sobic.003G146200.2.p  78 RPRLVWTDELHDLFVKAYDSLG--DEAVPRRILEKmnekMNVPEVSREKVASHLQKHKLH 135
                           59*******************4..77******976122267999************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1877138IPR009057Homeodomain-like
SuperFamilySSF466899.14E-1277138IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1579135IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESGEVKAEQ RQRQPPVTPK KRKLPKPEKS AQANGGSSSS AAESSPPSRT SSSSPPSNDA  60
DGKGLQQQQQ QGGGGGKRPR LVWTDELHDL FVKAYDSLGD EAVPRRILEK MNEKMNVPEV  120
SREKVASHLQ KHKLHLRRLA EEAASSHSSP TEEAPAAPSH PLRSLPPNTT PLAAEVSQAQ  180
LELLQQLLGP PIKEQQAKPA QTMQRAPADS GSSPADLYSN IWYQFRNCIS HSGIIMPLLC  240
YCSLSSVAIL VPEANTEAVT CMAQAAKAEN AAEAEKAAPT PGSILAQFWA SPDNEGSSTC  300
SWDIFGLSHG T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G146200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455524.21e-146two-component response regulator ARR1
TrEMBLA0A1W0VXG10.0A0A1W0VXG1_SORBI; Uncharacterized protein
STRINGSb03g012625.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5792122
Representative plantOGRP1965422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.13e-10response regulator 14