PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G148600.1.p
Common NameSb03g012890, SORBIDRAFT_03g012890
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 228aa    MW: 24222.2 Da    PI: 8.8607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G148600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1959109256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                           +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Sobic.003G148600.1.p  59 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 109
                           6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3859122IPR001471AP2/ERF domain
PROSITE profilePS5103224.48759116IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2259117IPR016177DNA-binding domain
CDDcd000181.42E-1659118No hitNo description
Gene3DG3DSA:3.30.730.105.2E-3259117IPR001471AP2/ERF domain
PRINTSPR003674.5E-116071IPR001471AP2/ERF domain
PfamPF008471.3E-1260108IPR001471AP2/ERF domain
PRINTSPR003674.5E-118298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MCGGAIIFDY IPAARRRLSS AADFWPGSDA DAEDSHASLT PAPERAPRAK KAKRGRKNQY  60
RGIRQRPWGK WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNDTS  120
SSVTAVPTTA AGAAAAQAPA VLPAPKVEAQ AQVSDEVKEL SEELMAYENY MNFLGIPYME  180
GGNAAAGATT AAAAATVAEE AQVPAAPAGL WSFEDYYYPP SLSLFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2259121568ATERF1
3gcc_A2e-2259121568ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170280.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G148600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9522800.0EU952280.1 Zea mays clone 1275260 ethylene-responsive factor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455546.11e-162ethylene-responsive transcription factor ERF071
TrEMBLC5XIU71e-161C5XIU7_SORBI; Uncharacterized protein
STRINGSb03g012890.11e-162(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-23ERF family protein