PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G154500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 124aa MW: 13398.9 Da PI: 11.1291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G154500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.8e-05	45	103	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksL 54 r+ ++ r+R+ i+ ++e Lr+l+P + ++++l+ e L +A YI L Sobic.003G154500.1.p 45 RTRAAASRKRVMAIRRKMEALRRLVPLCGdddgavvgrESGGERLD--ELLLHAAGYILCL 103 6678899*******************98666666666555555566..5666666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.804	42	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-7	43	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-5	44	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGAQSCCDAV AGTAPAATRR LKLTRPSASL MKARKLRKKA AGCKRTRAAA SRKRVMAIRR 60 KMEALRRLVP LCGDDDGAVV GRESGGERLD ELLLHAAGYI LCLQMQVRVM QVMVHALNNL 120 PED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G154500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311619.1	7e-83	uncharacterized protein LOC110433561
TrEMBL	A0A1B6Q3D2	2e-81	A0A1B6Q3D2_SORBI; Uncharacterized protein
STRING	GRMZM2G061052_P01	2e-49	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26
Representative plant	OGRP15974	2	2

Link Out ? help Back to Top
Phytozome	Sobic.003G154500.1.p