PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G157300.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 126aa    MW: 13611.4 Da    PI: 10.4074
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G157300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.8e-202256135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Sobic.003G157300.3.p 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2571652IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-151670IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-131857No hitNo description
Gene3DG3DSA:3.30.50.102.7E-162057IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-132157No hitNo description
PfamPF003201.4E-172256IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGSADRSKID GIVVAEKGAR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG  60
LDHKQQQQQN NGEAKAEVKD SSSNSSSSGS SNLQVVQKRR LLMGVEEAAF LLMTLSSPTF  120
TLLHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.49680.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G157300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403891e-141BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310786.18e-89GATA transcription factor 23-like
TrEMBLA0A1B6Q3G92e-87A0A1B6Q3G9_SORBI; Uncharacterized protein
STRINGSb03g013700.13e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-19GATA transcription factor 23