PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G163401.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 186aa    MW: 20177.4 Da    PI: 11.2561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G163401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.91e-0748891256
                   AP2 12 rgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                          +g W+ eIr+p     +   r ++gkf    eAa a++aa+ +++ge
  Sobic.003G163401.1.p 48 WGGWAMEIRVP-----HtrLRLWIGKFRHSLEAALAYDAAMFCFYGE 89
                          99********7.....335************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.5529100IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-84290IPR016177DNA-binding domain
SMARTSM003806.0E-448106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-134890IPR001471AP2/ERF domain
CDDcd000185.48E-134899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAASGTLTST VALAEARQQQ RSGCPATGST TSIRRDRQKA LGWAGVLWGG WAMEIRVPHT  60
RLRLWIGKFR HSLEAALAYD AAMFCFYGEH LPRPRRFNFL GMWHPTIPKH LRIHLTIPTI  120
RAIAADHGRS CAAFLAPLLC RAAPRGLSTQ PLMAMVPGSG TDGPGTTADS HLQLTLLSAT  180
NDHTM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G163401.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311834.11e-120ethylene-responsive transcription factor RAP2-1-like
TrEMBLA0A1W0VXJ41e-132A0A1W0VXJ4_SORBI; Uncharacterized protein
STRINGSb09g021016.14e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.14e-09ERF family protein