PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G170501.1.p

Common Name

Sb03g018690, SORBIDRAFT_03g018690

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 162aa MW: 19095.7 Da PI: 7.6365

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G170501.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.6	4.1e-13	11	98	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....leHn 86 kfY+ YA+evGF ++ ++k +++ C++eg+++ kkk+e + r +++++t+C k+k+k+ + ++k e++ + l Hn Sobic.003G170501.1.p 11 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLMHN 94 6************998655.......58999**********999****************997666555443333339* PP FAR1 87 Hela 90 H+++ Sobic.003G170501.1.p 95 HPCF 98 *976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-7	11	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MSFRNREEAR KFYSIYAEEV GFGLCYGNNK PYSYIIHCNN EGNNTYFKKK EELRVRDNTS 60 KKTHCMSKMK LKRIYDENKE EIAVVIEYVD LMHNHPCFKK KQETINLSEH KEKDPVFLEF 120 VDDLQAADVP HHSIQNIVRD MHGGGEHVPI TKRDLENRQL M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G170501.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1W0W4I2	1e-118	A0A1W0W4I2_SORBI; Uncharacterized protein
STRING	Sb02g041255.1	1e-114	(Sorghum bicolor)
STRING	Sb03g018690.1	1e-113	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43
Representative plant	OGRP30	12	351

Link Out ? help Back to Top
Phytozome	Sobic.003G170501.1.p
Entrez Gene	8074941