PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G176700.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 483aa MW: 56533 Da PI: 7.2026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G176700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.7	1e-09	11	79	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................t 48 ++Yn+YAk +GFs+r++ s++s ++e k +fvC+keg+ ++++ + + Sobic.003G176700.2.p 11 EYYNSYAKGTGFSIRTNMSRQSAITREKQKVQFVCNKEGFGRKRRVAaqlvdaitcysnndeveeedtA 79 69**************************************99998887888888888777776666551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-7	11	81	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.421	366	402	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	375	399	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0035	377	404	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MSFATLDEAK EYYNSYAKGT GFSIRTNMSR QSAITREKQK VQFVCNKEGF GRKRRVAAQL 60 VDAITCYSNN DEVEEEDTAQ EEEDEQVEKR KKLDGCKKRK REKMPSLKKF LRSHRGIPKQ 120 EKDSIVLLHG CNLSTGRIMQ LMSEFYGSAQ LVPYEGKQVS NFRSTIHKTE KFKDIQETLD 180 YFRALEEEDP EFFYKIKLDD NHRVENLFWV DSAARHAYKE AYNDCVSFDA TYMTNIYEMP 240 QSFIPAYYMH SFFPFLQSTQ RSEGSVQCFV EKYVNPNLSV LQFKIQEKCL VAQDGQDFRT 300 DENERRRWSR HPLEKHASTI YTKNMFYRFS KEFEKTTEYD VKPIGQFQYW VEPNNSFVYG 360 YGKRNYLVTT IEEDESYCCE CSKFDRDGII CCHIMRVMIR MSVKLIPERY ILKRWTQQAI 420 ASDTNQVQNV NAAVELVARG MPLTSEKTLR LTNASTVFAA IAVEGCTNDE NYAILEKHIK 480 EM*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MSFATLDEAK EYYNSYAKGT GFSIRTNMSR QSAITREKQK VQFVCNKEGF GRKRRVAAQL  60
VDAITCYSNN DEVEEEDTAQ EEEDEQVEKR KKLDGCKKRK REKMPSLKKF LRSHRGIPKQ  120
EKDSIVLLHG CNLSTGRIMQ LMSEFYGSAQ LVPYEGKQVS NFRSTIHKTE KFKDIQETLD  180
YFRALEEEDP EFFYKIKLDD NHRVENLFWV DSAARHAYKE AYNDCVSFDA TYMTNIYEMP  240
QSFIPAYYMH SFFPFLQSTQ RSEGSVQCFV EKYVNPNLSV LQFKIQEKCL VAQDGQDFRT  300
DENERRRWSR HPLEKHASTI YTKNMFYRFS KEFEKTTEYD VKPIGQFQYW VEPNNSFVYG  360
YGKRNYLVTT IEEDESYCCE CSKFDRDGII CCHIMRVMIR MSVKLIPERY ILKRWTQQAI  420
ASDTNQVQNV NAAVELVARG MPLTSEKTLR LTNASTVFAA IAVEGCTNDE NYAILEKHIK  480
EM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G176700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309075.1	1e-164	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_021311908.1	1e-159	protein FAR1-RELATED SEQUENCE 5
TrEMBL	C5XM65	0.0	C5XM65_SORBI; Uncharacterized protein
STRING	Sb04g002600.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18
Representative plant	OGRP10982	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-17	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G176700.2.p