PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G186200.1.p
Common NameSb03g025130, SORBIDRAFT_03g025130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Nin-like
Protein Properties Length: 404aa    MW: 44344 Da    PI: 7.1201
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.71.8e-26244293352
                RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           ++i +++l+kyF++pi+ AA+e++v+lTvLK++CR++G+ RWPhRk+ksl
  Sobic.003G186200.1.p 244 DHIGFDELRKYFYMPITRAAREMNVGLTVLKKRCRELGVLRWPHRKMKSL 293
                           6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.905225314IPR003035RWP-RK domain
PfamPF020421.0E-20246293IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAMAPCDDVG DADWYTYHVL GDLNLLCSSS SSYAMAAGSR EDESFYLPMY SAPPPAAVVG  60
DQYCSDQLQP LPADGALTSL DDALLLAPLS DIDLEAFDNN ADEQKKPPLE QMITIPPAVH  120
HHHHHHPAAA GTRAPPIHGT IAGQNAGVVV QAHQKKKAMV AVEDEDSSYF GRGAASGVET  180
AVVRVRHHDE HRQASSAAVA LVPPPPQQQQ PIPPPSLPQP RARRSGAGDR RQSSAPAPGK  240
TRLDHIGFDE LRKYFYMPIT RAAREMNVGL TVLKKRCREL GVLRWPHRKM KSLKSLMANV  300
QEMGNSMSPV ALEQELAALE TYCALMEEDP SIQLTERTKK LRQACFKESY KRRRAAAVSV  360
MDMDHIYSFG HGQHHHHQQP LPPPTSSAAD DRHGQQSSRF YGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G186200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039331e-55AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042581e-55AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149571e-55AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-55CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311902.10.0uncharacterized protein LOC8075003
TrEMBLC5XN080.0C5XN08_SORBI; Uncharacterized protein
STRINGSb03g025130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.18e-36RWP-RK domain-containing protein