PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G198000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 701aa    MW: 81956.1 Da    PI: 7.9649
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G198000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.91.9e-1916141190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................................teker 52 
                           ++Yn+YAk++GFs+r+++s++s  ++e  k +fvC+keg+ ++++ +                                       k+r
  Sobic.003G198000.2.p  16 EYYNSYAKRTGFSIRTNTSRRSAITREKQKVQFVCNKEGFGRKRRVAaqlvdgitcysdndeaeeedtaqeeedeqvekrkkfdGCKKR 104
                           69****************************************999999****************************9999999877888 PP

                  FAR1  53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           ++++   t+Cka+++vk    ++w+v+ +  eHnH+l+
  Sobic.003G198000.2.p 105 KREKMLYTNCKARMVVKII-GSRWQVIYFLAEHNHDLV 141
                           899999*************.9**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1716141IPR004330FAR1 DNA binding domain
PfamPF105511.2E-30264357IPR018289MULE transposase domain
PROSITE profilePS509669.371546582IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-4554578IPR007527Zinc finger, SWIM-type
SMARTSM005750.0026557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MPHNGMSFAT LDEAREYYNS YAKRTGFSIR TNTSRRSAIT REKQKVQFVC NKEGFGRKRR  60
VAAQLVDGIT CYSDNDEAEE EDTAQEEEDE QVEKRKKFDG CKKRKREKML YTNCKARMVV  120
KIIGSRWQVI YFLAEHNHDL VVQPSLKKFL RSHRGIPKQE KDFIVLLHGC NLSTGRIMQL  180
MSEFYGSAQL VPYDGKQVSN FRSTIHKTEK FKDMQETLDY FRALKEEDPE FFYKIKLDDN  240
HRVENLFWVD SAARRAYKEA YNDCVSFDAT YMTNIYEMPC TPFIGINRHC QTFQLGCAFI  300
RNEKTTTYEW LFLTFLEAMD RKAPLNIITD QDPAMRAAIC IVFPNTTHRN CRWHIMDKFS  360
GTIGPILAKN DELNEEFVDC LNHTVSPEDF ESKWATMVQK YGLEDNEHFQ HLYHIRQSFI  420
PAYYMHSFFP FLQSTQRSEG FNALLKKYVN PNLSVLQFVR QYQKIQEKCL VAQDGQDFRT  480
DENERRRWSR HPLEKHASTV YTKNMFYRFS KEFEKTAEYD VKPVGQFQYW LEPNNSFVFG  540
YGKRNYLVTA IEEDESYCCE CSKFDRDGII CCHIMRVMVR MGVKLIPERY ILKRWTQQAI  600
ASDTNQVQNV NAPVGLVARG MPLTSEKTLR FTNATTAFAA IAVEGCTNDE NYAILEKHIK  660
EMRSEFEEIK KRTMANRQNT SGAEGGATEV ACCISHCRCS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101108KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G198000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0VY600.0A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRINGSb05g008130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1361125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-94FAR1-related sequence 5