PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G203800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 263aa    MW: 29784.3 Da    PI: 5.0357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G203800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-121762471898
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +p  f+ ++   +++++++tl de+  ++ + +  + ++    l++GW +Fv +++L +gD +vF+l++r+ f  +v ++r
  Sobic.003G203800.1.p 176 FPTYFC-KYL--PKRDTMITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 247
                           577777.553..346789***************..6666..569************************98777..788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-17153248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-12154248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.347159249IPR003340B3 DNA binding domain
SMARTSM010192.6E-5159249IPR003340B3 DNA binding domain
CDDcd100172.83E-19159247No hitNo description
PfamPF023621.7E-10176248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SATVSEAAAA AVKPSSAKKR KARVPRNATA  60
EPLRRSGRIA NLPENEKPVY REDSDEERSD QDSDEERSDQ DSDEERSDQD SDEERSYQDS  120
DERRVCRCIP GIPCGYATGY AISKAEELVQ KLGSSFHVFT LPMTLFHVTG VFRPGFPTYF  180
CKYLPKRDTM ITLVDEEDDK FCMLYQPSKA ALSTGWGGFV VDHKLLDGDC LVFQLIERTM  240
FKVYIIRAAS YLKASTDEAS SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G203800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311549.10.0B3 domain-containing protein Os06g0194400 isoform X1
RefseqXP_021311550.10.0B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ69V365e-72Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLC5XPJ30.0C5XPJ3_SORBI; Uncharacterized protein
STRINGSb03g026600.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]