PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G203800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 227aa    MW: 25629.5 Da    PI: 4.4754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G203800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-121402111898
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +p  f+ ++   +++++++tl de+  ++ + +  + ++    l++GW +Fv +++L +gD +vF+l++r+ f  +v ++r
  Sobic.003G203800.2.p 140 FPTYFC-KYL--PKRDTMITLVDEEDDKFCMLY--QPSK--AALSTGWGGFVVDHKLLDGDCLVFQLIERTMF--KVYIIR 211
                           577777.553..346789***************..6666..569************************98777..788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-17117212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-13118212IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.347123213IPR003340B3 DNA binding domain
SMARTSM010192.6E-5123213IPR003340B3 DNA binding domain
CDDcd100172.00E-19123211No hitNo description
PfamPF023621.3E-10140212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SATVSEAAAA AVKPSSDSDE ERSDQDSDEE  60
RSDQDSDEER SDQDSDEERS YQDSDERRVC RCIPGIPCGY ATGYAISKAE ELVQKLGSSF  120
HVFTLPMTLF HVTGVFRPGF PTYFCKYLPK RDTMITLVDE EDDKFCMLYQ PSKAALSTGW  180
GGFVVDHKLL DGDCLVFQLI ERTMFKVYII RAASYLKAST DEASSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G203800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311549.11e-157B3 domain-containing protein Os06g0194400 isoform X1
RefseqXP_021311550.11e-157B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ69V361e-62Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A1W0VY641e-166A0A1W0VY64_SORBI; Uncharacterized protein
STRINGSb03g026600.11e-141(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]