PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G204200.1.p

Common Name

Sb03g026620, SORBIDRAFT_03g026620

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 252aa MW: 28607.5 Da PI: 6.955

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G204200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.1	8.8e-15	154	243	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + t s+v+ +l lpk f+++h k ++ t+tl de+ + + + +rk++ l++GWkeF+ + +L +gD +vF+l++r++f Sobic.003G204200.1.p 154 TQPITLSHVTGGFWLDLPKYFCQKHLPK--SDETITLVDEEDDESDTLYLVRKTG----LSTGWKEFAIERKLLDGDCLVFQLIERTKF 236 556677999999***********433..5569*9999999999777777....9**********************98888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v ++r+ Sobic.003G204200.1.p 237 --KVYIIRA 243 ..9998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-21	146	244	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.6E-18	148	244	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-22	151	242	No hit	No description
PROSITE profile	PS50863	11.096	153	244	IPR003340	B3 DNA binding domain
SMART	SM01019	4.9E-17	153	244	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-12	157	243	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MAEAVAYEEQ RRRQIEANKR KLEELQLHHL SAAVREAAAA AKPSSAKKRK AQVPRDAAAE 60 PLRRSGRVAN LPEKPIYREV KVNSPFLQVS KSNASVLWDA ATSVVAEPLR WSGRLANLPE 120 KPMYREDSDE ERSYAISKAD ELVQELGSSF PIFTQPITLS HVTGGFWLDL PKYFCQKHLP 180 KSDETITLVD EEDDESDTLY LVRKTGLSTG WKEFAIERKL LDGDCLVFQL IERTKFKVYI 240 IRATSYFESE Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G204200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041782	0.0	BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
GenBank	JX428493	0.0	JX428493.1 Zea mays subsp. mays clone pUT3090 ABI48 ABI3VP1 type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455874.1	0.0	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	3e-85	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	C5XPJ7	0.0	C5XPJ7_SORBI; Uncharacterized protein
STRING	Sb03g026620.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-43	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G204200.1.p
Entrez Gene	8082176

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]