PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G220700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 476aa    MW: 51863.8 Da    PI: 8.047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G220700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-12109134227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C f++ tGtCkyGd+CkF H++
  Sobic.003G220700.1.p 109 GQKDCAFYMSTGTCKYGDTCKFDHPQ 134
                           7889********************97 PP
2zf-CCCH18.82.9e-06158183127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C+ ++ +G Ck+ ++CkF+H++
  Sobic.003G220700.1.p 158 PGEPDCP-YLLSGRCKFKSKCKFNHPK 183
                           57899**.9999*************96 PP
3zf-CCCH34.14.8e-11211235327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C+f+a+tG Ck+G+ CkF H++
  Sobic.003G220700.1.p 211 EPVCSFYAKTGKCKFGAICKFDHPK 235
                           789********************96 PP
4zf-CCCH40.25.6e-13290315126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+f+++tG CkyG+ C+F+H+
  Sobic.003G220700.1.p 290 PGEVDCSFYMKTGSCKYGSVCRFNHP 315
                           57899********************9 PP
5zf-CCCH34.14.5e-11373395426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             C+f+++tG Cky  +CkF+H+
  Sobic.003G220700.1.p 373 IVCDFYMKTGSCKYSQKCKFHHP 395
                           57********************8 PP
6zf-CCCH33.56.9e-11424447427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           e C f++r+GtC++G  CkF H+p
  Sobic.003G220700.1.p 424 EACAFYMRSGTCRFGVHCKFDHPP 447
                           78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.009107135IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6108134IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5113133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081157183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554157184IPR000571Zinc finger, CCCH-type
PfamPF146080.55170182No hitNo description
SMARTSM003562.0E-5208235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5208236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878208236IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8211235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4213233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929289317IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7289316IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5293316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4295314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873369397IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5369396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6371398IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9373395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5374395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042420448IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5420447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5423448IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8424447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4424445IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSDPFNPYYR GAFAGGYSAP PPPPRYSDFE VDLIASRYTG TPSPYPSSAD VGAFDSYVGA  60
RRSAEVLYHQ SFMGSHSTVG QIEALYSSNT MAKRPRLESS LPIYPQRPGQ KDCAFYMSTG  120
TCKYGDTCKF DHPQWVPEGG VPNWKEVPNV EDSYPERPGE PDCPYLLSGR CKFKSKCKFN  180
HPKKMVNALA TGTDNESLIA DSAILPVRPS EPVCSFYAKT GKCKFGAICK FDHPKPKDIK  240
TPPLIAKETI YTATTDAAAN IGAADDSVPA KTRAPTAPAS HNAKGLPIRP GEVDCSFYMK  300
TGSCKYGSVC RFNHPDRPAV DIAFVAPLLP CPASTVPGVV LNPAANFLQS FDFHASHVPV  360
EPAPIYPQRP GEIVCDFYMK TGSCKYSQKC KFHHPIDRSA PHFNENGDPQ PPVTLGFPRR  420
EDAEACAFYM RSGTCRFGVH CKFDHPPRQK AISKLQAAGK EGIEGLSVAL HDPDV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.58910.0leaf| pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G220700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656560.0BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312416.10.0zinc finger CCCH domain-containing protein 8-like isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A1B6Q4P30.0A0A1B6Q4P3_SORBI; Uncharacterized protein
STRINGSb03g027910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-126floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]