PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G221900.1.p
Common NameSb03g028030, SORBIDRAFT_03g028030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 317aa    MW: 34512.2 Da    PI: 7.026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G221900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-093079154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r++ +  rE+ RRd++N+ f+ L   l ++     ++++Ka+iL  +++ +k+L
  Sobic.003G221900.1.p 30 RKVQKADREKMRRDKLNEQFQDLGNALDPD----RPRNDKATILGDTIQMLKDL 79
                          5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-132799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1328102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3852979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-73079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-73083No hitNo description
SMARTSM003537.7E-73585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSSSGPLPAT GTHHGSQRAE CKAQGSTSAR KVQKADREKM RRDKLNEQFQ DLGNALDPDR  60
PRNDKATILG DTIQMLKDLT TQVNKLKAEY TSLSEEAREL TQEKNELRDE KASLKSEVDN  120
LNNQYQQRMR VLYPWAGMEP SVVMGPPPAY PYPVPVHIPS GAVPMHPQLQ TYPFFHSQTS  180
GTIPNACIPY MAYTQPCHLP TDQPSNQLNT PVGHSSSHRS NSPAQDCRSK SSTPQQPSCG  240
MRSSDVGDIA TDLELKTPGS SCQSHSEIAN NDSSSDLKTK KHCIKQINGC TLTESSSSSR  300
CSSSGPPDVS NSAVDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.175230.0pollen
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G221900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9755130.0EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458163.10.0transcription factor bHLH121 isoform X2
SwissprotQ9LT234e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLC5XR280.0C5XR28_SORBI; Uncharacterized protein
STRINGSb03g028030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-74bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]