PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G226600.1.p
Common NameSb03g028440, SORBIDRAFT_03g028440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 414aa    MW: 44223 Da    PI: 8.5602
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G226600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.4e-26244302259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Sobic.003G226600.1.p 244 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 302
                           699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-26242304IPR003657WRKY domain
SuperFamilySSF1182904.71E-24243304IPR003657WRKY domain
SMARTSM007743.2E-31243303IPR003657WRKY domain
PROSITE profilePS5081129.126244304IPR003657WRKY domain
PfamPF031062.8E-22245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRACGGRALL DCQCQKSTHP FLLLQSPAYG QERSSTHASP LCSSKAPARR ARSWFMRGVL  60
LRMAEHFNDW DLQAVVRSCG SVAAHPDPAA PRAEPDAAPP EPTTTTPVAA PPERPPGARA  120
TPPTPVAVPV PVPVRGQEQR APPPVAAKAA ALLYDLEYLD LDHKPFLMPV VAPSPRAGDN  180
GRGEREVMIS FPAGAASTSG MQQRASPPGR KPGARTPRPK RSKKSQLKKV VREMPVADGG  240
SSSSDPWAWR KYGQKPIKGS PYPRGYYKCS SMKGCMARKL VERSPAKPGV LIVTYMAEHC  300
HPVPTQLNAL AGTTRHKTSS SGAASSPKSH EQGQAVEKAA GRGAGDREHG NNETSSSMAG  360
EFGGEEIAVA IDDDEFWPAG MDLDELLAPV DDDFDFEHVV EEEDGVLGRR LSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-17224305280Disease resistance protein RRS1
5w3x_D2e-17224305280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G226600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458190.10.0probable WRKY transcription factor 27
TrEMBLC5XEC40.0C5XEC4_SORBI; Uncharacterized protein
STRINGSb03g028440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Representative plantOGRP1140847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-35WRKY family protein