PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G244100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 497aa    MW: 52841.1 Da    PI: 10.708
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G244100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.36.3e-22352414163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L++e+++l++ ++kl++e+
  Sobic.003G244100.1.p 352 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRNEISKLTDSSQKLRMEN 414
                           689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-24144223IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.2E-17350411No hitNo description
SMARTSM003381.8E-20352416IPR004827Basic-leucine zipper domain
PfamPF001702.3E-20353414IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.472354417IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-11356411No hitNo description
CDDcd147026.93E-20357404No hitNo description
PROSITE patternPS000360359374IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MATRHGSRLG EHAGTDMGRG ARWPSSEATA GTRRPAPEPT RAHATGVTHS TRTVVGLRRP  60
HSSPHHPARV ALRPADVGPT PPVSSKSNAP PRRTCTHRHT HLLASPPHRG AAAASPFRVP  120
PPLAVRVSPS ADPRDAASTS TPTRRGRRFQ DQPAIYPCLD WSTMQAYYGQ GVLPPAFFNP  180
GIAPGHVPPP YVWCPQNMPP AAFGKPYAAI YPHAGGFLHP FMPLMVNPLS AEPAKSANSK  240
DNSLNKKLKE IDGTAVSSGN SEKTSGDYSL EGSSDGNNPK VSGTPKKRSF DDRTTSETCG  300
VSATNDKPGE SGRLATLPNV HIPDATMKPS VSTGSDFKVS GATSTEWPAK DDKESKRERR  360
KQSNRESARR SRLRKQAETE ELARKVELLT AENTSLRNEI SKLTDSSQKL RMENAALMEK  420
LAGGTSDQAQ EASAGHQTTA TAPPPSARVV KNFLSMMDVE GPSRGGGSRR TEHGAPRLRQ  480
LLSSGGPLAA DAVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368374RRSRLRK
2368375RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.80390.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G244100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6852080.0AY685208.1 Zea mays ABRE-binding factor BZ-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310900.10.0G-box-binding factor 3-like
TrEMBLA0A1B6Q5380.0A0A1B6Q538_SORBI; Uncharacterized protein
STRINGSb03g030050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.16e-38G-box binding factor 3