PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G246900.1.p
Common NameSb03g030330, SORBIDRAFT_03g030330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 88aa    MW: 9801.8 Da    PI: 6.5176
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G246900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.6e-101660344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +W++ E +l+ +a + +G g   +W+++ar mg  +t+ +++ ++
  Sobic.003G246900.1.p 16 NWSKKENKLFEEALACYGEGtpdRWHKVARAMGGIKTADEVRRHY 60
                          8********************************778********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-61366IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-121571IPR009057Homeodomain-like
PROSITE profilePS500906.471564IPR017877Myb-like domain
PfamPF002491.6E-71660IPR001005SANT/Myb domain
CDDcd001675.52E-71660No hitNo description
Gene3DG3DSA:1.10.10.604.4E-51661IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGSRNSSRN VNIDSNWSKK ENKLFEEALA CYGEGTPDRW HKVARAMGGI KTADEVRRHY  60
EILNDDVTLI ESGGVPFPNY NTQGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-25184177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G246900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281961e-103KJ728196.1 Zea mays clone pUT6470 MYB-related transcription factor (MYBR89) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.12e-60protein RADIALIS-like 3
SwissprotQ6NNN04e-26RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLC5XFX66e-59C5XFX6_SORBI; Uncharacterized protein
STRINGSb03g030330.19e-60(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-26RAD-like 6