PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G251700.1.p
Common NameSb03g030740, SORBIDRAFT_03g030740
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 703aa    MW: 77003.7 Da    PI: 6.4007
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G251700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24146247199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F 
  Sobic.003G251700.1.p 146 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL 233
                           99****************************963.3445679************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             + +++ l+++v+r+
  Sobic.003G251700.1.p 234 --RGEDGVLRLGVRRA 247
                           ..34899899999986 PP
2Auxin_resp103.13.5e-34272352182
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                           +a+a++t++vF+++YnPr s+seF+v+++k+ ++l++++svGmR +m++e++d+serr++G+++g ++++p  W +SkW++L
  Sobic.003G251700.1.p 272 VAQAVATRTVFHIYYNPRLSQSEFIVPYWKFTRSLNQPISVGMRCRMRYESDDASERRCTGIIIGSREAEP-IWYGSKWKCL 352
                           6899*******************************************************************.8********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-42138248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40142255IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-23144246No hitNo description
PROSITE profilePS5086313.394146248IPR003340B3 DNA binding domain
SMARTSM010195.1E-23146248IPR003340B3 DNA binding domain
PfamPF023623.2E-22146247IPR003340B3 DNA binding domain
PfamPF065071.5E-29272352IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAGIDLNTVE EEDEEEAEAE APPVAARAGG GAVCLELWHA CAGPVAPLPR KGSAVVYLPQ  60
GHLEHIGGDA DAAGAAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE EAERRARARV  120
REDEDADRDG EDGAAMKPLA RTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ  180
RPSQELVAKD LHGTEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGVL  240
RLGVRRAAQL KIVTPIPALH NQCSSQTTLG NVAQAVATRT VFHIYYNPRL SQSEFIVPYW  300
KFTRSLNQPI SVGMRCRMRY ESDDASERRC TGIIIGSREA EPIWYGSKWK CLVVRWDDGI  360
ECHWPNRVSP WEIEVTGSVS GSHMCAPNSK RLKPCLPQVN PEIVLPNGSV SSDFAGSVRF  420
HKVLQGQELL GLKTHDGTAI SAFQATEASN LQYSDERSNM SNNILGIPRL GVRSPNGIPG  480
FPYHCSGFGE SQRFQKVLQG QEVFRPFRGG CLADGHIRTA GMYQPKWPAP QGCDFPQPAK  540
PVLVLQASSP SSVLMFPQTG SKITPLEYEY SCLDKDEDGR FDRTVPTQDM GRNNQTLSLW  600
PHLVSGEAIE ECTGTENMHS SVSGAEHESN NESTVENGCK IFGISLAEKI RSCDEADSCS  660
AKRNSGLQPS RSQILGSCWA TVHEHRSVVG RVVDVSATDM MI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-1133238518363Auxin response factor 1
4ldx_B1e-1133238518363Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G251700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690050.0BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds.
GenBankJX4285080.0JX428508.1 Zea mays subsp. mays clone pUT3106 ARF12 ARF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310839.10.0LOW QUALITY PROTEIN: auxin response factor 2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLC5XG180.0C5XG18_SORBI; Auxin response factor
STRINGSb03g030740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Representative plantOGRP66851018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-149ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]