PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G254850.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 240aa    MW: 25038.7 Da    PI: 6.9638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G254850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.31.4e-14241442128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr...atksgyWkat 86 
                           pp f  hP+  el++ yL+++v + + ++ ++i+e+d+y ++P++L  + +          +k+ ++ +t+++ +r   + ++g W   
  Sobic.003G254850.1.p  24 PPTFDSHPSYVELMNSYLRPRVVSGT-KV-DFIHETDLYGADPNQLTgNLL-------PATAKSGEEGSTKTQMKRdvdTGRKGGWPGV 103
                           678899***************99888.45.68**************83222.......223445555556666666211345899**** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+ ++vls +g+ +g ++ ++f+++   + +k+ W m e rl
  Sobic.003G254850.1.p 104 GSPNDVLS-NGQRIGQRRYFAFHEKAGGDLVKSAWRMRELRL 144
                           ********.999************9999***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-2023166IPR003441NAC domain
PROSITE profilePS5100523.66523167IPR003441NAC domain
PfamPF023651.1E-524144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAGSPPKPPP PIFAAGSSSP KPPPPTFDSH PSYVELMNSY LRPRVVSGTK VDFIHETDLY  60
GADPNQLTGN LLPATAKSGE EGSTKTQMKR DVDTGRKGGW PGVGSPNDVL SNGQRIGQRR  120
YFAFHEKAGG DLVKSAWRMR ELRLDTNEGG QEEGSSDLLA LCKVYHFPNA EAGNESSMAV  180
AKADAEAPAA SAVTTAAGPG RKRKAGDTDS GTETVASSPA RQKKADGEGA DAATTGEKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G254850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VYW11e-174A0A1W0VYW1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2232157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.15e-10NAC 007