PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G254900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 378aa    MW: 40427.4 Da    PI: 6.6805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G254900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.2e-25101425128
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWkat 86 
                           f+ hP+d elv+ yL+  ve+   +   +i+++d+y ++P dL +      +  +e+ wyf+++ ++k+ +gkrk+r  at sg W++ 
  Sobic.003G254900.1.p  10 FQSHPSDLELVDSYLRTWVETGAKTG-AFIHDADVYAADPADLTRqfppaVACDGERAWYFYTPLRHKSLHGKRKTRtvATGSGCWHNE 97 
                           778******************99777.78**************74467754445788********************76688******* PP

                   NAM  87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            k+k+v+     +++++g ++++ f k+++   ++t W+m e rl
  Sobic.003G254900.1.p  98 AKSKPVYMVtngNQHQIGHRQSFSFVKKDTGVRVRTGWLMIELRL 142
                           ******9988888889**********9999999*******99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.9846167IPR003441NAC domain
SuperFamilySSF1019415.75E-317167IPR003441NAC domain
PfamPF023656.2E-149142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMLRSPSAAF QSHPSDLELV DSYLRTWVET GAKTGAFIHD ADVYAADPAD LTRQFPPAVA  60
CDGERAWYFY TPLRHKSLHG KRKTRTVATG SGCWHNEAKS KPVYMVTNGN QHQIGHRQSF  120
SFVKKDTGVR VRTGWLMIEL RLLKDGEKPE AEDSALGNRV LCKVYRSPRN PEPSGSGATA  180
SASAAAAAAP GHKAEADDDD DESSDATLDD NDYYYDDDSS NASLDAASGP KKRRADDVES  240
SEGTVAAPSR HSKANDEISG GAAAAPGRKE KEEINEDSVE TSAAAPPRKR KALDDESSDA  300
ARARKKKADG SSSPGAAPVS ATEMQCPQCG THLVVTLKKA ESKSETAIAK DESASGTPPR  360
GQTRGSSQKN VRFLQFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288306KRKALDDESSDAARARKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G254900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0875891e-134BT087589.1 Zea mays full-length cDNA clone ZM_BFb0124L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458310.20.0NAC domain-containing protein 71
TrEMBLC5XGN30.0C5XGN3_SORBI; Uncharacterized protein
STRINGGRMZM2G163843_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1201646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-19NAC domain containing protein 47