PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G265200.1.p
Common NameSb03g031860, SORBIDRAFT_03g031860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family RAV
Protein Properties Length: 414aa    MW: 42484.7 Da    PI: 9.9625
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G265200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1180128155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Sobic.003G265200.1.p  80 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 128
                           78****9888.8*********......44**********99*************98 PP
2B3100.31.2e-31222314186
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l led  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F
  Sobic.003G265200.1.p 222 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNLEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGF 310
                           89*******************************5556799************************************************* PP

                           EE-S CS
                    B3  83 kldg 86 
                           ++++
  Sobic.003G265200.1.p 311 YRSS 314
                           9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-1680136IPR016177DNA-binding domain
PfamPF008471.0E-780128IPR001471AP2/ERF domain
CDDcd000184.43E-2280136No hitNo description
PROSITE profilePS5103219.65181136IPR001471AP2/ERF domain
SMARTSM003801.4E-2481142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1981136IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-39214338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-31220313IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-30220313No hitNo description
PROSITE profilePS5086313.93222329IPR003340B3 DNA binding domain
SMARTSM010191.3E-22222321IPR003340B3 DNA binding domain
PfamPF023622.2E-28222314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDSASSLVDD TSSGSGGGGG ASTDKLRALA VAAAASGPPL ERMGSGASAV LDAAEPGAEA  60
DSAAAAAPGA VGVGGKLPSS RYKGVVPQPN GRWGAQIYER HQRVWLGTFA GEADAARAYD  120
VAAQRFRGRD AVTNFRPLAD ADPDAAAELR FLASRSKAEV VDMLRKHTYF DELAQNKRAF  180
AAAAAAAASS AATTTASSLA NNNNNHSSLA SPSPATAREH LFDKTVTPSD VGKLNRLVIP  240
KQHAEKHFPL QLPSAGGESK GVLLNLEDAA GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK  300
GLQAGDVVGF YRSSAVGAGA DTKLFIDCKL RPNSVATAST TTGPAVGSSP PAPAPAPVAT  360
KAVRLFGVDL LTAPAATAAA PAEAMAAGCK RARDLASPPQ AAFKKQLVEL ALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5121934711130DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.194610.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G265200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695190.0EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458352.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLC5XHG30.0C5XHG3_SORBI; Uncharacterized protein
STRINGSb03g031860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.18e-94RAV family protein