PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G274000.3.p
Common NameSb03g032600, SORBIDRAFT_03g032600
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 282aa    MW: 29513.3 Da    PI: 6.3854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G274000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-163174146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          rg+++++E+ l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  Sobic.003G274000.3.p 31 RGSFSQQEEALIVELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 74
                          899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.379125IPR017877Myb-like domain
SuperFamilySSF466893.51E-211181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-111137IPR009057Homeodomain-like
PROSITE profilePS5129426.3212680IPR017930Myb domain
SMARTSM007172.2E-163078IPR001005SANT/Myb domain
PfamPF002494.5E-153174IPR001005SANT/Myb domain
CDDcd001673.47E-123373No hitNo description
Gene3DG3DSA:1.10.10.601.5E-203877IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAAGAQSPDK QRCGKSCRLR WINYLRPDLK RGSFSQQEEA LIVELHRVLG NRWAQIAKHL  60
PGRTDNEVKN FWNSTIKKKL ISQAVGSLHP DLYYNILDGA AVQGLAAAGC APLNGAADSA  120
SAQAAVGVTQ SPPPMLHNNP AAWSDFGSQP LFLPGHGGIH GGGGDLQYAA VDGEFVKQCR  180
AADSYPPPED GGGYASQCKP PPAADVVPQQ EGAMARSLIP AVFLEPNKCA AGDFMPEPAM  240
APVMDFMEAI LAGSSSTSAA SASSLDSFSA NAGMQSHCWI P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26108038108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G274000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9587341e-141EU958734.1 Zea mays clone 1711992 MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313392.10.0myb-related protein 305
TrEMBLA0A1W0VZ450.0A0A1W0VZ45_SORBI; Uncharacterized protein
STRINGSb03g032600.11e-166(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-42myb domain protein 26