PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G278300.2.p

Common Name

Sb03g033020, SORBIDRAFT_03g033020

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Trihelix

Protein Properties

Length: 352aa MW: 39039.7 Da PI: 8.6025

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G278300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.3	2.6e-10	74	165	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpy 81 +Wt++ + aL++a + r +r+ ++ W ev++++ r g+ s qC+++ + l+k++kk++e+++ + s s+++y Sobic.003G278300.2.p 74 KWTERSTFALLDAWGDSFVRAGRSIIRADEWLEVARRVcaaadRPAGY-FSDSQCRNRVDTLRKKFKKERERARLAnrrSGLSPSKWVY 161 7***********************************9996444444.5999*************998754212577889 PP trihelix 82 fdql 85 +d++ Sobic.003G278300.2.p 162 YDKM 165 99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-15	73	167	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSDDAAAAAS PSPSTSPSPS SASSSGASPS PSSPRTKRRR TDRYALGFEF APRLAPYELP 60 EDPLSDKPKR SGPKWTERST FALLDAWGDS FVRAGRSIIR ADEWLEVARR VCAAADRPAG 120 YFSDSQCRNR VDTLRKKFKK ERERARLANR RSGLSPSKWV YYDKMVSILC PSPLPLPLPA 180 PPPPPPQLPL QLLPLAAKRR RDRQPSRCFQ WGMKAPERLL GGGGDVVGPR VSGSGAELGE 240 REPQKNNAVE LNRNGFVALT ESIQKFEEVF ARMERSKRQQ MLEVEQMRRD LHRDLDAKWR 300 EILEKAQVEI ARLSNEDGDE GDSDEDGDVG DDKRLEDDGA EQNNGAMDAS P*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSDDAAAAAS PSPSTSPSPS SASSSGASPS PSSPRTKRRR TDRYALGFEF APRLAPYELP  60
EDPLSDKPKR SGPKWTERST FALLDAWGDS FVRAGRSIIR ADEWLEVARR VCAAADRPAG  120
YFSDSQCRNR VDTLRKKFKK ERERARLANR RSGLSPSKWV YYDKMVSILC PSPLPLPLPA  180
PPPPPPQLPL QLLPLAAKRR RDRQPSRCFQ WGMKAPERLL GGGGDVVGPR VSGSGAELGE  240
REPQKNNAVE LNRNGFVALT ESIQKFEEVF ARMERSKRQQ MLEVEQMRRD LHRDLDAKWR  300
EILEKAQVEI ARLSNEDGDE GDSDEDGDVG DDKRLEDDGA EQNNGAMDAS P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G278300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040925	0.0	BT040925.1 Zea mays full-length cDNA clone ZM_BFc0153A15 mRNA, complete cds.
GenBank	BT060889	0.0	BT060889.1 Zea mays full-length cDNA clone ZM_BFb0066D07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458413.2	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A1W0VZ68	0.0	A0A1W0VZ68_SORBI; Uncharacterized protein
STRING	Sb03g033020.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-12	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sobic.003G278300.2.p
Entrez Gene	8059188