PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G280000.1.p
Common NameSb03g033160, SORBIDRAFT_03g033160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 319aa    MW: 34284 Da    PI: 4.5302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G280000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Sobic.003G280000.1.p 14 RGPWSQEEDAILRSFVQRFGNAgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                          89******************99*************************97 PP
2Myb_DNA-binding44.53.5e-1469111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +T eEd l++ +  +lG++ W+ Ia++++ gRt++++k++w++
  Sobic.003G280000.1.p  69 GGFTDEEDNLILSLYGELGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                           569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.297962IPR017930Myb domain
SuperFamilySSF466898.07E-2711109IPR009057Homeodomain-like
SMARTSM007171.6E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-221569IPR009057Homeodomain-like
CDDcd001673.16E-81662No hitNo description
PROSITE profilePS5129421.09463117IPR017930Myb domain
SMARTSM007173.6E-1367115IPR001005SANT/Myb domain
PfamPF002494.3E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2270116IPR009057Homeodomain-like
CDDcd001674.28E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCDKT RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDNLIL SLYGELGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAA  120
STREEGRPPP TSPPAATPSG DDSTAAAGSD QQAQRQDEPL LLPLTPPALT DLDDTGTAAF  180
VDTGARATVV VDDDMLLFKS EQLYAELVGL VDEKQSSQQA TTGASAGSRD EASTATPSSS  240
LSGTTSSSPT VSSSSGSCTL WPDTTLLPES TTGLFDDYGV GDAFGVALLP AYYFQDLMAA  300
SSYDDVTATV AQDLLYYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26141164104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-26141164104C-Myb DNA-Binding Domain
1msf_C6e-26141164104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G280000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-129AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456264.10.0transcription factor MYB58
TrEMBLC5XID70.0C5XID7_SORBI; Uncharacterized protein
STRINGSb03g033160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-65MYB family protein