PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G281100.1.p
Common NameSb03g033260, SORBIDRAFT_03g033260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 391aa    MW: 44298.6 Da    PI: 9.659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G281100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.53.3e-2019118198
                           EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                           ffkvl   +   ++rl +p +f++++           + ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv++++L+e +f
  Sobic.003G281100.1.p  19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrkaktTL-KEASMAATLEGPSGRTWLVVI--RRSAEGTFFTSGWPKFVQDQELRELEF 101
                           66777...4455668********888***999888543.45899****************..*************************** PP

                           EEEEE-SSSEE..EEEEE- CS
                    B3  80 vvFkldgrsefelvvkvfr 98 
                           +vF++dg + f  + +vf+
  Sobic.003G281100.1.p 102 LVFRHDGGTHF--TAMVFD 118
                           ****9987777..666665 PP
2B352.49.3e-17290376598
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +
  Sobic.003G281100.1.p 290 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--R 371
                           6788999999*********9995..345679***************4.444455..9***********************997777..9 PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           v+vfr
  Sobic.003G281100.1.p 372 VHVFR 376
                           99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2014122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2014122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5216120IPR003340B3 DNA binding domain
CDDcd100171.83E-1817118No hitNo description
PfamPF023622.0E-1719116IPR003340B3 DNA binding domain
SMARTSM010191.5E-1119120IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-23279376IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-21279376IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-24284376No hitNo description
SMARTSM010194.1E-11286378IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944286378IPR003340B3 DNA binding domain
PfamPF023621.9E-15288376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPAEERQSPW ASGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKAK TTLKEASMAA  60
TLEGPSGRTW LVVIRRSAEG TFFTSGWPKF VQDQELRELE FLVFRHDGGT HFTAMVFDTT  120
ACQREDLLLG TTACERQSNK RRRARTEPSR DANAKRPNKD SLGKELVPYR APREQQVSCS  180
NSTPESAGAV KTEIEDGDEV ALCVMIPAPP PSPDHAPPKR GPEPQQVEDG AVKTRSIHED  240
LQALADIPDS VRRYKGYVSR RRPVTGAERQ RAMELAYAFR SSLPYCVIRM STMHVYYSFM  300
MRFPTGFSRQ HLPRERTDVV LRDPGGKAWV VLYIPNTRDR LSRGWCAFAR GNCLEEGDYC  360
VFELVGAAEF RVHVFRVVEP AVPAVRLRST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G281100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-86HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313509.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLC5XIE60.0C5XIE6_SORBI; Uncharacterized protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-25B3 family protein