PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G281100.2.p
Common NameSb03g033260, SORBIDRAFT_03g033260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 334aa    MW: 37619.8 Da    PI: 8.8951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G281100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-153613698
                          EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                           tle +sgr+W v +  r++ +++++t+GW +Fv++++L+e +f+vF++dg + f  + +vf+
  Sobic.003G281100.2.p  3 ATLEGPSGRTWLVVI--RRSAEGTFFTSGWPKFVQDQELRELEFLVFRHDGGTHF--TAMVFD 61
                          689************..*******************************9987777..666665 PP
2B352.87e-17233319598
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +
  Sobic.003G281100.2.p 233 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--R 314
                           6788999999*********9995..345679***************4.444455..9***********************997777..9 PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           v+vfr
  Sobic.003G281100.2.p 315 VHVFR 319
                           99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1163IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338163IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-14365IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-12359IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-13365IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-11461No hitNo description
SuperFamilySSF1019361.16E-23222319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21222319IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-25227319No hitNo description
SMARTSM010194.1E-11229321IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944229321IPR003340B3 DNA binding domain
PfamPF023621.4E-15231319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAATLEGPSG RTWLVVIRRS AEGTFFTSGW PKFVQDQELR ELEFLVFRHD GGTHFTAMVF  60
DTTACQREDL LLGTTACERQ SNKRRRARTE PSRDANAKRP NKDSLGKELV PYRAPREQQV  120
SCSNSTPESA GAVKTEIEDG DEVALCVMIP APPPSPDHAP PKRGPEPQQV EDGAVKTRSI  180
HEDLQALADI PDSVRRYKGY VSRRRPVTGA ERQRAMELAY AFRSSLPYCV IRMSTMHVYY  240
SFMMRFPTGF SRQHLPRERT DVVLRDPGGK AWVVLYIPNT RDRLSRGWCA FARGNCLEEG  300
DYCVFELVGA AEFRVHVFRV VEPAVPAVRL RST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G281100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-69HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682893.11e-180B3 domain-containing protein Os01g0723500 isoform X2
SwissprotQ8S2E61e-158Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A1W0VZA80.0A0A1W0VZA8_SORBI; Uncharacterized protein
TrEMBLC5XIE60.0C5XIE6_SORBI; Uncharacterized protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein