PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G286700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 261aa    MW: 28683.7 Da    PI: 8.809
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G286700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.5e-32381302103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F+ k++++++d++++ +++w   +n+f+vld+ +f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv++++         weF+h+sF +g+
  Sobic.003G286700.1.p  38 FVAKTFHMVSDPATDAVVRWGGASNTFLVLDPATFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDTDR---------WEFAHESFLRGQ 117
                           9********************999******************************************99.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                            +ll  + rkk++
  Sobic.003G286700.1.p 118 AHLLPLVVRKKKK 130
                           *********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3528121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-4634127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3035127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-173861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2738127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-1789101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGSECKDHLQ LHAAGYGVGV ASPQEEEEEE QAGAIAPFVA KTFHMVSDPA TDAVVRWGGA  60
SNTFLVLDPA TFSDYLLPSY FKHRNFASFV RQLNTYGFRK VDTDRWEFAH ESFLRGQAHL  120
LPLVVRKKKK KKAAGGCREQ LCEEGEEVRG TIRAVQRLRD QQRGMEEELQ AMDRRLRAAE  180
SRPGQMMAFL AKLADEPGVV LRAMLAKKEE LALAGKGSTT PAPGKRRRIG AEAGVGDVAD  240
MAQSRGAVPF PFSVLGQVFY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-243512726129Heat shock factor protein 1
5d5v_B4e-243512726129Heat shock factor protein 1
5d5v_D4e-243512726129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131RKKKKKK
2224228KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G286700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9540420.0EU954042.1 Zea mays clone 1452946 heat shock factor protein HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311267.10.0heat stress transcription factor C-1b
SwissprotQ942D61e-139HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A1B6Q5W30.0A0A1B6Q5W3_SORBI; Uncharacterized protein
STRINGSb03g033750.11e-168(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-62heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]