PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G287200.1.p
Common NameSb03g033780, SORBIDRAFT_03g033780
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 247aa    MW: 26679 Da    PI: 7.6103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G287200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.8e-33167225159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK vk+se+prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Sobic.003G287200.1.p 167 LDDGYRWRKYGQKAVKNSEHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 225
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33153225IPR003657WRKY domain
SuperFamilySSF1182902.09E-28161226IPR003657WRKY domain
PROSITE profilePS5081128.564162227IPR003657WRKY domain
SMARTSM007746.2E-39167226IPR003657WRKY domain
PfamPF031063.9E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MENQHLQGDE SSSSHALPSF PYFAVPSPPY APPPPSEDQH STLITALQQQ PSSSACNNDD  60
LPPLGLGPDQ LAAVAAPMIL PPMVDWSALL QQASLMGPQL VPGLLQQVPP LEPLDQSGEN  120
DGGDAGSSSS SKEKVVAKGG GGAGRSGKKK ASRPRFAFQT RSVNDILDDG YRWRKYGQKA  180
VKNSEHPRSY YRCTHHTCNV KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALSPILKQL  240
QFLSQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-24157224774Probable WRKY transcription factor 4
2lex_A9e-24157224774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G287200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282441e-145KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456305.10.0WRKY transcription factor SUSIBA2
TrEMBLC5XJ410.0C5XJ41_SORBI; Uncharacterized protein
STRINGSb03g033780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.18e-56WRKY DNA-binding protein 24