PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G298100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family VOZ
Protein Properties Length: 641aa    MW: 71175.6 Da    PI: 5.2236
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G298100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ422.19.1e-1303425582217
                   VOZ   2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 
                           +psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaataksp
  Sobic.003G298100.1.p 342 APSAFLKPKCALWDCPRPAIGSERWHDYCSMYHADLAVQEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKNVGIPICEGAATAKSP 430
                           69************************************9879*********************************************** PP

                   VOZ  90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178
                           wna+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdysgrgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyeine+d
  Sobic.003G298100.1.p 431 WNAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINECD 519
                           ***************************************************************************************** PP

                   VOZ 179 alalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                           a+alyrle+k++d+kk ak+k+++++l+++q++++rl+a
  Sobic.003G298100.1.p 520 AFALYRLEFKSSDAKKIAKSKLACNPLNEIQQQMVRLSA 558
                           *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014475.75E-5194204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLGPGVARLL LPRPSLFPRP PTPTQQSGSQ SQKENSAEHL ACETEERTAR ERGERKTTTT  60
PSIPLHFHPS SPPIAAATMG KGPSSRAGSR HHQFRARAMT RVDDLQEVFS GLQSARKDSR  120
PADAAVLEAQ LQQMLREWRS ELSAPSPASS LQGNARELSD PPSDTLRLLQ LAAAEEEDDA  180
TSKMVEQQQQ QQQPPPPPPP PPPPSADQNQ GHAQVRQDMK PEPREEAIDV AVEQPQPQLL  240
SQGVLPNGAA TASAVFHDQM YYVNQELTVE DFLYDDDYKI DLSGSNLDVL NNLEGIVQLE  300
YPQFNFPQEL APNACLDMSN CGQSAGGVFL HMTDLLTTMT SAPSAFLKPK CALWDCPRPA  360
IGSERWHDYC SMYHADLAVQ EEGPPGTMPV IRPRGIDLKD GPLFAALSAK IQGKNVGIPI  420
CEGAATAKSP WNAPELFDLY IFEGESIREW LFFDKPRRAF DSGNRKQRSL PDYSGRGWHE  480
SRKQVMKDFG GLKRSYYMDP QPSNSYEWHL YEYEINECDA FALYRLEFKS SDAKKIAKSK  540
LACNPLNEIQ QQMVRLSADS PVDTKRMARS RTKANPVDVN TNIYSVPNTA VQANVPNAYQ  600
PGPQVDQMTY LNGNVVYGPH LPYGYSTEKS DFYWNSNDGT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.110960.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G298100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424030.0BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458501.20.0transcription factor VOZ1
SwissprotQ9SGQ01e-149VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA0A1B6Q6420.0A0A1B6Q642_SORBI; Uncharacterized protein
STRINGSb03g034810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Representative plantOGRP23271335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-131vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]