PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G299700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 452aa    MW: 47672.1 Da    PI: 7.1352
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G299700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.83.9e-34126252189
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec....eaesssssa 82 
                           aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el+ +   ++++a+e+    e+++++ s+
  Sobic.003G299700.1.p 126 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIDELPADraeGQPAATEAadatEPAEQVTST 214
                           689**************************************************************888444443333223444444443 PP

                   TCP  83 snsssg..................................k 89 
                           s+                                      k
  Sobic.003G299700.1.p 215 SS---YgfgnpsgaiggvagsfmphsvgsadggvsgsgnvK 252
                           31...123344445556555555555555555544444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-32128266IPR005333Transcription factor, TCP
PROSITE profilePS5136933.017129187IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTQGQCSTGR RGQVSLLKLE EDKNQLSKGL DPWSNPTAAT ASTLHYLLQE KERAQAQEQL  60
QIYHQQGFSS YLQHHHRRQQ QQQQQQQSRA AAAGAGAGAD GVSSGESTPV DALATAFGGG  120
RIVRSAAGRK DRHSKVCTAR GLRDRRVRLA AHTAIRFYDV QDRLGYDRPS KAVDWLIRNA  180
KAAIDELPAD RAEGQPAATE AADATEPAEQ VTSTSSYGFG NPSGAIGGVA GSFMPHSVGS  240
ADGGVSGSGN VKSLFPSSST ASTTPTQDEY RGSPPDLLSR TTSSHHPQEL CLTLQSTNNQ  300
QHQIFSHHVS QSHHGMISGA GVQGWSEHGQ RMPSWHAAAS ENSSAGDGRG AAGNGDSYMF  360
GVPPRHQGLD HQGQLFSQGE PLQSSGGWPS ARAWLDPLAA IHQPSTIAGQ VGGFSHLVGA  420
GAGGFMGFLA PAAAHQRLQG EEEQGSEAMR E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-20134188155Putative transcription factor PCF6
5zkt_B1e-20134188155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G299700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656550.0BT065655.1 Zea mays full-length cDNA clone ZM_BFc0004O06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456371.20.0transcription factor PCF7
SwissprotQ8LT051e-153PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A1B6Q6510.0A0A1B6Q651_SORBI; Uncharacterized protein
STRINGSb03g034918.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Representative plantOGRP1436733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-33TCP family protein