PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G311100.1.p
Common NameSb03g035920, SORBIDRAFT_03g035920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 224aa    MW: 23126.3 Da    PI: 8.5938
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G311100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.34.6e-37421461100
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C aCk+lrr+C+++Cv+ap+f       + +++fa+vhk+FGasnv k+l+++p   r+da+s+++yeA+ar+ dPvyG+vg+il+lq
  Sobic.003G311100.1.p  42 PCGACKFLRRRCVPGCVFAPHFggsggGGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASTVCYEAQARIADPVYGCVGTILALQ 130
                           7*********************7665544667********************************************************* PP

                DUF260  85 qqleqlkaelallkee 100
                           +q++ ++ael+ +++e
  Sobic.003G311100.1.p 131 HQVALVQAELSIAQTE 146
                           ***********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.44141147IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-4142144IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSRATQSPSK RANAASVAAV AAAGPAHAQG EEASSLWGAG APCGACKFLR RRCVPGCVFA  60
PHFGGSGGGG AGAAQFAAVH KVFGASNVAK MLSRVPVALR RDAASTVCYE AQARIADPVY  120
GCVGTILALQ HQVALVQAEL SIAQTELLNH RLALATVHPA YTVASPTSQM VNCSSLSQAV  180
DFIDTEPKCF PPPLLPLPSQ QQREQERERG SPTDVFAHNT PGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-39381507114LOB family transfactor Ramosa2.1
5ly0_B1e-39381507114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G311100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0864120.0BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds.
GenBankKJ7277260.0KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456415.11e-162LOB domain-containing protein 20
SwissprotQ9SRV31e-51LBD20_ARATH; LOB domain-containing protein 20
TrEMBLC5XLJ41e-161C5XLJ4_SORBI; Uncharacterized protein
STRINGSb03g035920.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-40LOB domain-containing protein 20