PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G324500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 178aa    MW: 18716.2 Da    PI: 10.2819
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G324500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-192979256
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +++GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Sobic.003G324500.1.p 29 RFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPAEAALAYDRAARTLRGA 79
                          69*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-312988IPR001471AP2/ERF domain
PfamPF008476.1E-132978IPR001471AP2/ERF domain
SMARTSM003805.1E-332992IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-212987IPR016177DNA-binding domain
PROSITE profilePS5103221.9572986IPR001471AP2/ERF domain
CDDcd000181.97E-292988No hitNo description
PRINTSPR003671.1E-93041IPR001471AP2/ERF domain
PRINTSPR003671.1E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDPTLRAVLG HGGGDGGARG GGGGGGAERF RGVRKRPWGR YAAEIRDPWK KTRVWLGTFD  60
TPAEAALAYD RAARTLRGAK AKTNFPDHAG HLAPLLRLRQ PPPQPVSFGG VNNVDCPTTP  120
WQFVYLQTPT TAAAPLPPTT AAMPPLVTTE PPSTALELGR GQRCGGLPFD LNEAPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-202186472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G324500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282614e-81KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311437.11e-124ethylene-responsive transcription factor 12
TrEMBLC5XMF21e-123C5XMF2_SORBI; Uncharacterized protein
STRINGSi003053m7e-57(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.18e-25ERF domain protein 12