PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G333300.1.p
Common NameSb03g037830, SORBIDRAFT_03g037830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 303aa    MW: 32476 Da    PI: 4.9715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G333300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.31.6e-28381822127
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk..sgyWkat 86 
                           +pG+rF Ptd+el+v+yL +k++g++l++  v+++  d y  +P++L  k+ ++ + +wy Fs+r++kya g r++ra+   +g Wkat
  Sobic.003G333300.1.p  38 APGVRFVPTDQELIVDYLGRKLRGESLPT-GVVQDGhDAYAEHPKKLVPKLGEGMEgSWYLFSPRQRKYAGGMRPKRAMGddEGHWKAT 125
                           69**************************9.6655555**********63444444449*******************876669****** PP

                   NAM  87 gkdkevlsk..kgelvglkktLvfy.............k.grapkgektdWvmheyr 127
                           g +k+vl    ++e++g+++ L+f+             + ++++ ++ ++W m e+ 
  Sobic.003G333300.1.p 126 GAEKPVLGGadGKEVIGTRRALTFHedtyevgsngrrrRvKNKSASKPSKWKMVEFV 182
                           *******98778899**********77776666555441344555567999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3333211IPR003441NAC domain
PROSITE profilePS5100534.55837212IPR003441NAC domain
PfamPF023651.3E-1639182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSESTSWTPG VVPAYYNEDY LAVPGVVAAA YNEEYLTAPG VRFVPTDQEL IVDYLGRKLR  60
GESLPTGVVQ DGHDAYAEHP KKLVPKLGEG MEGSWYLFSP RQRKYAGGMR PKRAMGDDEG  120
HWKATGAEKP VLGGADGKEV IGTRRALTFH EDTYEVGSNG RRRRVKNKSA SKPSKWKMVE  180
FVCSNSCRAP GNDAALDPML LNDFVLCKIT NRSLSVEGDE EQPTSEGGGG GGGEPYEKHL  240
PEQQQAGGGG AGTQAGQQQQ GPSGGGAASH GNQQPAPAED PPLDIYSMDV DWFANSMLPI  300
FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-193921317169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G333300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456527.10.0NAC transcription factor 56
TrEMBLC5XN650.0C5XN65_SORBI; Uncharacterized protein
STRINGSb03g037830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Representative plantOGRP1891622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.17e-25NAC domain containing protein 2