PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.003G336600.1.p

Common Name

Sb03g038080, SORBIDRAFT_03g038080

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WOX

Protein Properties

Length: 279aa MW: 30818.3 Da PI: 6.4467

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.003G336600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Sobic.003G336600.1.p 100 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	101.2	7.4e-33	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Sobic.003G336600.1.p 99 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-17	95	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	96	161	IPR001356	Homeobox domain
SMART	SM00389	2.1E-14	98	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-18	99	163	IPR009057	Homeodomain-like
CDD	cd00086	3.84E-15	100	162	No hit	No description
Pfam	PF00046	3.5E-19	100	160	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEWGDRAKAS AAAAAAAAAA AAADERSAVG EGLGGYVKVM TDEQMEVLRK QISIYATICE 60 QLVDMHRTLT EHQDTIAGMR FSNLYCDPLI IPGGHKITAR QRWQPTPMQL QILENIFDQG 120 NGTPSKQKIK EITAELSHHG QISETNVYNW FQNRRARSKR KQAASLPNNA ESEAEVDEES 180 LTDKKPKSDR PLQDHKAMGA HSADRISGMH HFDTDHDQIG GMMYGCNDNG LRSSGSSGQM 240 SFYENIMSNP RIDHFPGKVE SSRSFPHLQH GEGFDMFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.003G336600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063919	0.0	BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-133	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	C5XN90	0.0	C5XN90_SORBI; Uncharacterized protein
STRING	Sb03g038080.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-59	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Sobic.003G336600.1.p
Entrez Gene	8055301

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]