PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G337500.1.p
Common NameSb03g038170, SORBIDRAFT_03g038170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 237aa    MW: 26640.6 Da    PI: 6.2735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G337500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.7e-2552112258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                           +Dgy+WrKYGqK+++g+ +pr YYrCt++   gCp++k+ve++ ++dp ++ ++Y++eH++
  Sobic.003G337500.1.p  52 HDGYQWRKYGQKMIRGNAYPRCYYRCTYHqdhGCPATKHVEQTnSQDPPLFRVIYTNEHTC 112
                           7***************************98999*******975268*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-2536113IPR003657WRKY domain
SuperFamilySSF1182903.27E-2245112IPR003657WRKY domain
SMARTSM007741.6E-3551114IPR003657WRKY domain
PfamPF031065.8E-2553112IPR003657WRKY domain
PROSITE profilePS5081120.50753110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAKRDDYMDS SCGCSNGTPK RLVQDCSSYA QAHAKKKVRI STRTEYTYAP YHDGYQWRKY  60
GQKMIRGNAY PRCYYRCTYH QDHGCPATKH VEQTNSQDPP LFRVIYTNEH TCCSTHVSDY  120
MASSIHIQQI ADASLRKVEV EIPSLTHCFD GHGLIKEEND AIISSLTAIS DYDVATSDGG  180
HAAVQEDTPA RMSRSSNEAS PSISPVLLPA SDNLKTDFIE QLEPQWFEPL DLGWFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-1339110269WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G337500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566700.0EU956670.1 Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456546.11e-180probable WRKY transcription factor 32
RefseqXP_021311159.11e-180probable WRKY transcription factor 32
RefseqXP_021311160.11e-180probable WRKY transcription factor 32
RefseqXP_021311161.11e-180probable WRKY transcription factor 32
RefseqXP_021311162.11e-180probable WRKY transcription factor 32
TrEMBLC5XN991e-178C5XN99_SORBI; Uncharacterized protein
STRINGSb03g038170.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Representative plantOGRP1534434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.26e-21WRKY DNA-binding protein 67