PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G346500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 166aa    MW: 17772.7 Da    PI: 6.5172
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G346500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.65.9e-5621113294
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           reqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yveplk+yl+ky
  Sobic.003G346500.1.p  21 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVEPLKIYLQKY 109
                           89*************************************************************************************** PP

                 NF-YB  91 rele 94 
                           re +
  Sobic.003G346500.1.p 110 REGD 113
                           *965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5319121IPR009072Histone-fold
SuperFamilySSF471131.51E-3923116IPR009072Histone-fold
PfamPF008081.3E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-235472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.5E-237391No hitNo description
PRINTSPR006156.5E-2392110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MADDGGSHEG GGGGGGGGGY REQDRFLPIA NISRIMKKAV PANGKIAKDA KETLQECVSE  60
FISFVTSEAS DKCQKEKRKT INGDDLLWAM ATLGFEEYVE PLKIYLQKYR EGDSKLSTKA  120
GEGSIKKDAI SSHGGTSSSS NQLVQHGVYN QGMGYMQPQY HNGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B4e-5019111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-5019111294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G346500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9757580.0EU975758.1 Zea mays clone 499728 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816143.11e-102nuclear transcription factor Y subunit B-3-like
SwissprotP252092e-86NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A1W0W0931e-118A0A1W0W093_SORBI; Uncharacterized protein
STRINGSi003159m1e-100(Setaria italica)
STRINGGRMZM2G303465_P041e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-65nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]