PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G349700.1.p
Common NameSb03g039270, SORBIDRAFT_03g039270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 187aa    MW: 19588.8 Da    PI: 6.0787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G349700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00116082123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k+F++   L  H  +H
  Sobic.003G349700.1.p 60 FECKTCSKRFPSFQALGGHRTSH 82
                          89**********99998888777 PP
2zf-C2H211.90.00067108130123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C  Cg  Fs    L  H+r+H
  Sobic.003G349700.1.p 108 HECAVCGLEFSMGQALGGHMRRH 130
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.14E-65784No hitNo description
PfamPF139124.1E-125982IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4296087IPR007087Zinc finger, C2H2
SMARTSM003550.186082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4106135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-6106135No hitNo description
PfamPF139122.2E-11107132IPR007087Zinc finger, C2H2
SMARTSM003550.89108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTLTRHEAEE SKEMEGLRAH AEALLTLSAP ASSSSLGTGG TPPAPSSAAA RRAMAAEGVF  60
ECKTCSKRFP SFQALGGHRT SHTRLQARML SDPAAAAAAA ERDRARVHEC AVCGLEFSMG  120
QALGGHMRRH RGEAPPAAHD DDPAQAQPDR DMPDLNLPPL DDGSGGGPQQ SDYDRGSEPQ  180
LLNLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G349700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711161e-129EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456606.12e-94zinc finger protein AZF2
TrEMBLA0A1W0W0D61e-129A0A1W0W0D6_SORBI; Uncharacterized protein
STRINGSb03g039270.16e-94(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-23C2H2 family protein