PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G353000.2.p
Common NameSb03g039550, SORBIDRAFT_03g039550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 192aa    MW: 20453.8 Da    PI: 6.0003
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G353000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.42.2e-11162189229
                           --SS-EEEEEEE--TT-SS-EEEEEE-S CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCts 29 
                           +Dgy+WrKYGqK++k++++p  +  C+ 
  Sobic.003G353000.2.p 162 SDGYKWRKYGQKSIKNNPHPSIFQNCSC 189
                           7********************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-9158188IPR003657WRKY domain
SuperFamilySSF1182904.32E-9159189IPR003657WRKY domain
SMARTSM007747.1E-4161189IPR003657WRKY domain
PROSITE profilePS5081112.794162191IPR003657WRKY domain
PfamPF031061.3E-7163188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGDGDYGLHP EPGAADVAVW PGELDEQLIT ELLSDDSLLL GTLPPPQQVP AGDDPEEQHC  60
SRDTGGASSA PAAPCISGGG TAAEHRELLP QPEAVSRALC SVYTGPTIRD IEKALSTTRP  120
YPWSWSSSRY SPTMHLGRLG ALSRAPEKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH  180
PSIFQNCSCC S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G353000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016164e-32FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458749.11e-121WRKY transcription factor WRKY62
TrEMBLA0A1W0W0D91e-137A0A1W0W0D9_SORBI; Uncharacterized protein
STRINGSb03g039550.11e-120(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-13WRKY DNA-binding protein 49