PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G353000.3.p
Common NameSb03g039550, SORBIDRAFT_03g039550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 183aa    MW: 19536.8 Da    PI: 6.3482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G353000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.68e-11162182222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                           +Dgy+WrKYGqK++k++++pr
  Sobic.003G353000.3.p 162 SDGYKWRKYGQKSIKNNPHPR 182
                           7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-9158182IPR003657WRKY domain
SuperFamilySSF1182902.88E-8159182IPR003657WRKY domain
PROSITE profilePS5081112.22162182IPR003657WRKY domain
PfamPF031062.0E-7163182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGDGDYGLHP EPGAADVAVW PGELDEQLIT ELLSDDSLLL GTLPPPQQVP AGDDPEEQHC  60
SRDTGGASSA PAAPCISGGG TAAEHRELLP QPEAVSRALC SVYTGPTIRD IEKALSTTRP  120
YPWSWSSSRY SPTMHLGRLG ALSRAPEKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH  180
PR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G353000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032409e-33AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149579e-33AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-33CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8355099e-33CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458749.11e-129WRKY transcription factor WRKY62
TrEMBLA0A1W0W0F21e-129A0A1W0W0F2_SORBI; Uncharacterized protein
STRINGSb03g039550.11e-128(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.18e-13WRKY DNA-binding protein 49